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microarray

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Java Treeview 1.1.5r2
Author: alokito
Date: 24 May, 2012
Downloads: 17
Size: 1.4 MB
License: Freeware
Java Treeview - An Open Source, Extensible Viewer for Microarray Data in the PCL or CDT format * Open Source, Cross-Platform Gene Expression Visualization Tool * Interactive Display of Clustered Gene Expression Data, similar to Eisen's TreeView * Ext
Platform: Mac, Mac OS X
Category: Utilities / Other
MicroArray Explorer 1.0
Author: maexplorer.sourceforge.net
Date: 11 August, 2012
Downloads: 0
Size: 1.8 MB
License: Freeware
Microarray Explorer (MAExplorer) is a Java microarray data-mining bioinformatics program. It includes data management, graphics, statistics, clustering, reports, gene data-filtering, user written MAEPlugins, documentation, tutorials, demo data.
Platform: Windows, Mac, Solaris, Linux
Category: Education / Science
PheMaDB (Phenotype Microarray DataBase) 1.1
Author: phemadb.sourceforge.net
Date: 25 August, 2012
Downloads: 0
Size: 44.7 MB
License: Freeware
PheMaDB is a web-based data management system to store and analyze OmniLog Phenotype Microarray data. The manuscript can be accessed here: http://www.biomedcentral.com/1471-2105/12/109. Chang WE et al. BMC Bioinformatics. 2011 Apr 20;12(1):109.
Platform: Mac
Category: Education / Science
StepMiner 1.0 Alpha
Author: Debashis Sahoo
Date: 05 May, 2013
Downloads: 0
Size: 6.4 MB
License: Shareware
StepMiner is a new method for analyzing time course microarray data that extracts transitions between two states, up-regulated and down-regulated. For each gene, StepMiner reports the model that best matches its behavior.
Platform: Mac, Mac OS X
Category: Education / Other
AltAnalyze 2.02 Beta
Author: Nathan Salomonis & Bruce Conklin
Date: 27 November, 2013
Downloads: 6
Size: 27.2 MB
License: Freeware
AltAnalyze is a freely available, open-source and cross-platform program that allows you to take RNASeq or relatively raw microarray data (CEL files or normalized), identify predicted alternative splicing or alternative promoter changes and view how
Platform: Mac, Mac OS X
Category: Graphic Apps
MeV for Mac OS X 4.6.2 r2536
Author: MeV
Date: 27 November, 2013
Downloads: 6
Size: 20.6 MB
License: Freeware
MeV or Multiple Experiment Viewer is a Java tool to help you with microarray gene expression data analysis.
Platform: Mac, Mac OS X
Category: Graphic Apps
ADF MAGE-ML Tool 1.0
Author: adfconverter.sourceforge.net
Date: 18 August, 2012
Downloads: 0
Size: 23.5 MB
License: Freeware
In order to facilitate standardization and exchange of microarray layout, this project provides an ADF (Array design File))/MAGE-ML converter.
Platform: Windows, Mac, Linux
Category: Education / Science
anntools 1.0
Author: anntools.sourceforge.net
Date: 11 June, 2012
Downloads: 0
Size: 1.5 MB
License: Freeware
AnnTools is an efficient, fast and robust bioinformatics tool annotating SNP and CNV calls generated from sequencing and microarray data.
Platform: BSD, Mac, Linux
Category: Education / Science
ArrayExpress Tab2MAGE 20080626
Author: tab2mage.sourceforge.net
Date: 29 August, 2012
Downloads: 0
Size: 3.6 MB
License: Freeware
Tab2MAGE uses a flexible spreadsheet format for MIAME annotation of microarray experiments. Tab2MAGE spreadsheets may be submitted directly to ArrayExpress, or used to generate MAGE-ML for data exchange.
Platform: Windows, Mac, Linux
Category: Education / Science
arrayplex 1.0.3
Author: arrayplex.sourceforge.net
Date: 13 August, 2012
Downloads: 0
Size: 92.0 MB
License: Freeware
ArrayPlex integrates various forms of microarray data from diverse annotation and primary data sources. It provides a programmatic framework (API set) for collaborative development and deploys as easy to maintain client-server architecture.
Platform: Windows, BSD, Mac, Linux
Category: Education / Science
AutoMATRIX 1.0
Author: auto-matrix.sourceforge.net
Date: 01 September, 2012
Downloads: 0
Size: 10.7 MB
License: Freeware
AutoMATRIX is a tool to predict key transcription factors in microarray experiments.
Platform: Windows, Mac, Linux
Category: Education / Science
Color Deconvolution for TMA images 1.00
Author: colordecontmas.sourceforge.net
Date: 23 August, 2012
Downloads: 0
Size: 35.7 KB
License: Freeware
This is a collection of ImageJ macros (scripts) for performing color deconvolution and analysis of immunohistochemistry (IHC) staining on tissue microarray (TMA) images
Platform: Windows, Mac, Linux
Category: Education / Science
EPTable 0.1.1
Author: eptable.sourceforge.net
Date: 10 July, 2012
Downloads: 1
Size: 20.0 KB
License: Freeware
EPTable is a simple web-based tool to analyze microarray gene expression profiles with additional gene profiles.
Platform: BSD, Mac, Linux
Category: Education / Science
MagicTool 1.0
Author: magictool.sourceforge.net
Date: 19 May, 2012
Downloads: 2
Size: 2.4 MB
License: Freeware
MicroArray Genome Imaging and Clustering Tool (MAGIC tool) is a platform-independant java program for analyzing MicroArray data (.tiff scans & .txt godlists) via graphs and clustering operations (including QT-clustering). http://www.bio.davidson.
Platform: Windows, Mac, Linux
Category: Education / Science
Maple Tree 0.2.3.2
Author: mapletree.sourceforge.net
Date: 21 July, 2012
Downloads: 7
Size: 1.2 MB
License: Freeware
Maple Tree is a Java based visualization tool used by researchers in the biological sciences to visualize and graphically browse the results of analyses of gene expression data collected from microarray experiments.
Platform: Windows, Mac, Linux
Category: Education / Science
MASQOT-GUI 1.0.1
Author: masqot-gui.sourceforge.net
Date: 16 May, 2012
Downloads: 0
Size: 1.7 MB
License: Freeware
MASQOT-GUI is an open-source, platform-independent application for two-channel microarray spot quality control. Included is a set of tools for gridding, segmentation, quantification, multivariate spot quality assessment and data visualization.
Platform: Windows, Mac, Linux
Category: Education / Science
mged 1.0
Author: mged.sourceforge.net
Date: 21 May, 2012
Downloads: 0
Size: 761.9 KB
License: Freeware
Microarray Gene Expression Database Group and OMG Gene Expression Standard (MAGE)
Platform: Windows, Mac, Linux
Category: Education / Science
ONDEX Suite 2012
Author: ondex.org
Date: 17 October, 2012
Downloads: 1
Size: 160.8 MB
License: Freeware
Framework for text mining, data integration and data analysis. Keywords: ontology and graph alignment, relation mining, warehouse, semantic database integration, bioinformatics, systems biology, microarray, Java.
Platform: Windows, Mac, Linux
Category: Education / Science
RapidMiner Feature Selection Extension 1.1.4
Author: rm-featselext.sourceforge.net
Date: 21 July, 2012
Downloads: 0
Size: 1024.0 KB
License: Freeware
This RapidMiner-plugin consists of operators for feature selection and classification - mainly on high-dimensional (microarray-) data - and some helper-classes/operators.
Platform: Windows, Mac, Linux
Category: Education / Science
TIGR Spotfinder 1.0
Author: spotfinder.sourceforge.net
Date: 25 September, 2012
Downloads: 1
Size: 4.8 MB
License: Freeware
Spotfinder is an image processing software tool for microarray image analisys. It is written on C++ with QT GUI toolkit and runs on Windows, X11, and Mac OSX.
Platform: Windows, BSD, Mac, Linux
Category: Education / Science
UCSF NOMAD 0.8.5.1
Author: ucsf-nomad.sourceforge.net
Date: 06 August, 2012
Downloads: 0
Size: 458.8 KB
License: Freeware
NOMAD is a system for supporting microarray experiments. it facilitates the archival and retrieval of experiment results, and is being developed to provide integrated analytical tools.
Platform: Windows, Mac, Linux
Category: Education / Science
HIDRA 0.5 Beta
Author: Matthew Hibbs
Date: 12 April, 2013
Downloads: 0
Size: 9.0 MB
License: Shareware
HIDRA is a multi-dataset microarray visualization system. HIDRA is currently under development, as such some features are not yet implemented and there may be bugs in the software.
Platform: Mac, Mac OS X
Category: Business / Math & Scientific Tools
ErmineJ 2.1.21
Author: Paul Pavlidis
Date: 05 July, 2013
Downloads: 1
Size: 21.1 MB
License: Freeware
ErmineJ performs analyses of gene sets in expression microarray data or other genome-wide data that results in rankings of genes. A typical goal is to determine whether particular biological pathways are "doing something interesting" in the data.
Platform: Mac, Mac OS X
Category: Education / Other
MAExplorer 1.0
Author: lemkin
Date: 06 April, 2013
Downloads: 0
Size: 1.3 MB
License: Freeware
Microarray Explorer (MAExplorer) is a Java-based data-mining facility for cDNA or oligonucleiotide microarray databases. It may be downloaded and run as a stand-alone application on your computer.
Platform: Mac, Mac OS X
Category: Network & Internet / Browser Tools
QSB 1.0
Author: Yan Cui
Date: 02 August, 2013
Downloads: 0
Size: 1.8 MB
License: Shareware
QSB is a computational tool developed for genetical genomics, an emerging field that combines quantitative genetics and genomics.
Platform: Mac, Mac OS X
Category: Education / Other